pyrosetta_help.installer package

Module contents

This module is aimed at helping to install pyrosetta. If PyRosetta is installed but if it segfaults on import due to wrong GNU lib C (glic) or there’s a missing dependency that is a different matter.

pyrosetta_help.installer.check_pyrosetta() → bool

this will return True if

• it is installed regardless if it segfaults or there’s a missing dependency

• something called pyrosetta has been loaded, including a Mock

pyrosetta_help.installer.download_pyrosetta(username: None | str = None, password: None | str = None, path: str = '.', hash_comparison_required: bool = True, on_preexisting: str = 'return') → str

path is wither it is saved. on_preexisting can be ‘return’, ‘raise’, ‘delete’ or ‘ignore’ (& download anyway).

pyrosetta_help.installer.get_latest_release_url(username: str, password: str, wheel: bool = True, hash_comparison_required: bool = True) → str

Doing pip install xx:xxx@https://xx:xxx@graylab.jhu.edu/download/PyRos.../latest.html results in authetical loop drama in following the 302.

pyrosetta_help.installer.get_os_name() → str

pyrosetta_help.installer.install_pyrosetta(username: None | str = None, password: None | str = None, path: str = '.', hash_comparison_required: bool = True) → int

If there’s a folder in path with PyRosetta release it will install that.

If username and password arent provided the evironmental variables PYROSETTA_USERNAME or PYROSETTA_PASSWORD are used. It checks to see if hashes of the password is correct or the Rosetta one.

pyrosetta_help.installer.parse()

Parse command line arguments -h for help.

Returns: